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Main Web>UsersTaskForceWiki>UsersTaskForceStDenis>RStDWorkBookGridWork>RStDSimG25Nov05 (2005-11-26, RichardStDenis) EditAttachPDFRStDSimG25Nov05
Prepare
[lxplus]cat e100_simgrid.jdl
############# Athena #################
Executable = "athena_sim03.sh";
StdOutput = "athena_sim.out";
StdError = "athena_sim.err";
InputSandbox = {"athena_sim03.sh","RomeSimulationConfig100.py","RomeGeo2G4.py","fieldmap.dat"};
OutputSandbox= {"athena_sim.out","athena_sim.err","athena_result.out", "CLIDDBout.txt"};
Requirements = Member("VO-atlas-release-10.0.1", other.GlueHostApplicationSoftwareRunTimeEnvironment);
######################################
[lxplus]cat athena_sim03.sh
#!/bin/bash
source $VO_ATLAS_SW_DIR/software/10.0.1/setup.sh
source $SITEROOT/dist/10.0.1/Control/AthenaRunTime/*/cmt/setup.sh
# Get the File
lcg-cp -v --vo atlas stdenis_vbf_vex06d_v3_003.pool.root \
file://`pwd`/vbf.pool.root
# Insert the file into the FileCatalog
pool_insertFileToCatalog vbf.pool.root
# Run the job:
cp $SITEROOT/dist/10.0.1/InstallArea/share/PDGTABLE.MeV .
athena.py RomeSimulationConfig100.py RomeGeo2G4.py > athena_result.out 2>&1
ls -l
hostname
lcg-cr -v --vo atlas -d se2-gla.scotgrid.ac.uk \
-l lfn:stdenis_vbfsim_vex06d_v3_003.pool.root file://`pwd`/vbfg4hits.pool.root
[lxplus]
[lxplus]cat RomeSimulationConfig100.py
#
# This is the configuration file to run Rome Simulation
# Use the following switches for:
# EvtMax = Number of events to simulate
# SkipEvents = Number of events from input file to skip
# PoolEvgenInput= Input collections. The list of files for the events to simulate
# PoolHitsOutput= Output file name
#--------------------------------------------------------------
# Get Configuration flags:
#--------------------------------------------------------------
include( "AthenaCommon/AthenaCommonFlags.py" )
EvtMax = 100
#SkipEvents=10
PoolEvgenInput=["vbf.pool.root"]
PoolHitsOutput="vbfg4hits.pool.root"
#--------------------------------------------------------------
# Set some of the global flags. Like eg the DD version:
#--------------------------------------------------------------
DetDescrVersion='Rome-Initial'
[lxplus]
[lxplus] edg-job-submit -vo atlas -o jid1 e100_simgrid.jdl
Selected Virtual Organisation name (from --vo option): atlas
Connecting to host gdrb03.cern.ch, port 7772
Logging to host gdrb03.cern.ch, port 9002
export JOB=
================================ edg-job-submit Success =====================================
The job has been successfully submitted to the Network Server.
Use edg-job-status command to check job current status. Your job identifier (edg_jobId) is:
- https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
The edg_jobId has been saved in the following file:
/afs/cern.ch/user/s/stdenis/testarea/10.0.1/PhysicsAnalysis/AnalysisCommon/UserAnalysis/UserAnalysis-00-02-02/share/jid1
=============================================================================================
[lxplus]export JOB=https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
[lxplus]./ckjob
Sat Nov 26 03:14:06 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
Current Status: Waiting
reached on: Sat Nov 26 02:13:52 2005
*************************************************************
Sat Nov 26 03:15:07 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
Current Status: Scheduled
Status Reason: Job successfully submitted to Globus
Destination: prod-ce-01.pd.infn.it:2119/jobmanager-lcglsf-atlas
reached on: Sat Nov 26 02:14:54 2005
*************************************************************
Results
Sat Nov 26 04:11:27 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
Current Status: Scheduled
Status Reason: Job successfully submitted to Globus
Destination: prod-ce-01.pd.infn.it:2119/jobmanager-lcglsf-atlas
reached on: Sat Nov 26 02:14:54 2005
*************************************************************
Sat Nov 26 04:12:55 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
Current Status: Running
Status Reason: Job successfully submitted to Globus
Destination: prod-ce-01.pd.infn.it:2119/jobmanager-lcglsf-atlas
reached on: Sat Nov 26 03:12:08 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
Current Status: Running
Status Reason: Job successfully submitted to Globus
Destination: prod-ce-01.pd.infn.it:2119/jobmanager-lcglsf-atlas
reached on: Sat Nov 26 03:12:08 2005
*************************************************************
Sat Nov 26 04:15:00 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
Current Status: Done (Success)
Exit code: 1
Status Reason: There were some warnings: some file(s) listed in the output sandbox were not available and were ignored
Destination: prod-ce-01.pd.infn.it:2119/jobmanager-lcglsf-atlas
reached on: Sat Nov 26 03:14:37 2005
*************************************************************
[lxplus]cd /tmp/stdenis
[lxplus]edg-job-get-output -dir . $JOB
Retrieving files from host: gdrb03.cern.ch ( for https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg )
*********************************************************************************
JOB GET OUTPUT OUTCOME
Output sandbox files for the job:
- https://gdrb03.cern.ch:9000/r1vdYcFcoM8eqQQuxUpQZg
have been successfully retrieved and stored in the directory:
/tmp/stdenis/stdenis_r1vdYcFcoM8eqQQuxUpQZg
*********************************************************************************
[lxplus]ls stdenis_r1vdYcFcoM8eqQQuxUpQZg
athena_result.out athena_sim.err athena_sim.out
[lxplus]more stdenis_r1vdYcFcoM8eqQQuxUpQZg/athena_sim.err
lcg_cp: Invalid argument
Could not open the file "vbf.pool.root"
lcg_cr: No such file or directory
[lxplus]more stdenis_r1vdYcFcoM8eqQQuxUpQZg/athena_sim.err
lcg_cp: Invalid argument
Could not open the file "vbf.pool.root"
lcg_cr: No such file or directory
[lxplus]more stdenis_r1vdYcFcoM8eqQQuxUpQZg/athena_sim.out
vbf.pool.root Error You cannot open a ROOT file in mode READ if it does not exists.
StorageSvc Error Cannot connect to Database: FID= PFN=vbf.pool.root
total 4728
-rw-r--r-- 1 atlas008 atlas 12780 Nov 26 04:10 athena_result.out
-rwxr-xr-x 1 atlas008 atlas 605 Nov 26 04:09 athena_sim03.sh
-rw-r--r-- 1 atlas008 atlas 65 Nov 26 04:10 athena_sim.err
-rw-r--r-- 1 atlas008 atlas 161 Nov 26 04:10 athena_sim.out
-rw-r--r-- 1 atlas008 atlas 4745062 Nov 26 04:09 fieldmap.dat
-rwxr-xr-x 1 atlas008 atlas 32957 Nov 26 04:10 PDGTABLE.MeV
-rw-r--r-- 1 atlas008 atlas 106 Nov 26 04:10 PoolFileCatalog.xml
-rw-r--r-- 1 atlas008 atlas 5552 Nov 26 04:09 RomeGeo2G4.py
-rw-r--r-- 1 atlas008 atlas 885 Nov 26 04:09 RomeSimulationConfig100.py
prod-wn-009.pd.infn.it
Using grid catalog type: edg
Forgot the lfn: in the lcg-cp. Try again
Prepare2
[lxplus]edg-job-submit -vo atlas -o jid1 e100_simgrid.jdl Selected Virtual Organisation name (from --vo option): atlas Connecting to host gdrb01.cern.ch, port 7772 Logging to host gdrb01.cern.ch, port 9002 ================================ edg-job-submit Success ===================================== The job has been successfully submitted to the Network Server. Use edg-job-status command to check job current status. Your job identifier (edg_jobId) is: - https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ The edg_jobId has been saved in the following file: /afs/cern.ch/user/s/stdenis/testarea/10.0.1/PhysicsAnalysis/AnalysisCommon/UserAnalysis/UserAnalysis-00-02-02/share/jid1 ============================================================================================= [lxplus]export JOB=https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ [lxplus]./ckjob Sat Nov 26 05:19:20 CET 2005 ************************************************************* BOOKKEEPING INFORMATION: Status info for the Job : https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ Current Status: Ready Status Reason: unavailable Destination: ce001.m45.ihep.su:2119/jobmanager-pbs-short reached on: Sat Nov 26 04:19:17 2005 ************************************************************* Sat Nov 26 05:23:22 CET 2005 ************************************************************* BOOKKEEPING INFORMATION: Status info for the Job : https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ Current Status: Scheduled Status Reason: Job successfully submitted to Globus Destination: zeus02.cyf-kr.edu.pl:2119/jobmanager-lcgpbs-atlas reached on: Sat Nov 26 04:20:34 2005 ************************************************************* Sat Nov 26 05:24:23 CET 2005 ************************************************************* BOOKKEEPING INFORMATION: Status info for the Job : https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ Current Status: Running Status Reason: Job successfully submitted to Globus Destination: zeus02.cyf-kr.edu.pl:2119/jobmanager-lcgpbs-atlas reached on: Sat Nov 26 04:23:48 2005 *************************************************************
Results2
Sat Nov 26 20:23:28 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ
Current Status: Running
Status Reason: Job successfully submitted to Globus
Destination: zeus02.cyf-kr.edu.pl:2119/jobmanager-lcgpbs-atlas
reached on: Sat Nov 26 04:23:48 2005
*************************************************************
Sat Nov 26 20:24:29 CET 2005
*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ
Current Status: Done (Success)
Exit code: 0
Status Reason: Job terminated successfully
Destination: zeus02.cyf-kr.edu.pl:2119/jobmanager-lcgpbs-atlas
reached on: Sat Nov 26 19:24:27 2005
*************************************************************
[lxplus]edg-job-get-output -dir . $JOB
Retrieving files from host: gdrb01.cern.ch ( for https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ )
*********************************************************************************
JOB GET OUTPUT OUTCOME
Output sandbox files for the job:
- https://gdrb01.cern.ch:9000/EZaBp1DFYCzdZZn5jJ3VRQ
have been successfully retrieved and stored in the directory:
/tmp/stdenis/stdenis_EZaBp1DFYCzdZZn5jJ3VRQ
*********************************************************************************
[lxplus][lxplus]cd stdenis_EZaBp1DFYCzdZZn5jJ3VRQ
[lxplus]ls
athena_result.out athena_sim.err athena_sim.out CLIDDBout.txt
[lxplus]ls -l
total 240
-rw-r--r-- 1 stdenis zp 213435 Nov 26 20:32 athena_result.out
-rw-r--r-- 1 stdenis zp 6058 Nov 26 20:32 athena_sim.err
-rw-r--r-- 1 stdenis zp 2198 Nov 26 20:32 athena_sim.out
-rw-r--r-- 1 stdenis zp 11499 Nov 26 20:32 CLIDDBout.txt
[lxplus]
[lxplus]cat athena_sim.err
0 bytes 0.00 KB/sec avg 0.00 KB/sec instWarning in : no dictionary for class TriggerInfo is available
Warning in : no dictionary for class EventType is available
Warning in : no dictionary for class EventID is available
Warning in : no dictionary for class EventInfo is available
Warning in : no dictionary for class HepMC::WeightContainer is available
Warning in : no dictionary for class Hep3Vector is available
Warning in : no dictionary for class HepLorentzVector is available
Warning in : no dictionary for class HepMC::GenVertex is available
Warning in : no dictionary for class HepMC::Polarization is available
Warning in : no dictionary for class HepMC::Flow is available
Warning in : no dictionary for class HepMC::GenParticle is available
Warning in : no dictionary for class HepMC::GenEvent is available
Warning in : no dictionary for class DataVector is available
Warning in : no dictionary for class McEventCollection is available
Warning in : no dictionary for class DataHeaderElement is available
Warning in : no dictionary for class DataHeader is available
WARNING: $POOL_CATALOG is not defined
using default `xmlcatalog_file:PoolFileCatalog.xml'
[lxplus]cat athena_sim.out
Source URL: lfn:stdenis_vbf_vex06d_v3_003.pool.root
File size: 1828194
VO name: atlas
Source URL for copy: gsiftp://pool1-gla.scotgrid.ac.uk/pool1-gla:/gridstorage/d1/atlas/2005-11-26/fileeca6dc98-ce35-4883-bf34-ae84d8554f12.2159.0
Destination URL: file:///home/atlas014/globus-tmp.zeus69.26776.0/WMS_zeus69_027246_https_3a_2f_2fgdrb01.cern.ch_3a9000_2fEZaBp1DFYCzdZZn5jJ3VRQ/vbf.pool.root
# streams: 1
# set timeout to 0 (seconds)
Transfer took 5850 ms
total 51680
-rw-r--r-- 1 atlas014 atlas 213435 Nov 26 20:18 athena_result.out
-rwxr-xr-x 1 atlas014 atlas 609 Nov 26 05:21 athena_sim03.sh
-rw-r--r-- 1 atlas014 atlas 1774 Nov 26 05:22 athena_sim.err
-rw-r--r-- 1 atlas014 atlas 456 Nov 26 05:22 athena_sim.out
-rw-r--r-- 1 atlas014 atlas 11499 Nov 26 20:18 CLIDDBout.txt
-rw-r--r-- 1 atlas014 atlas 4745062 Nov 26 05:21 fieldmap.dat
-rwxr-xr-x 1 atlas014 atlas 32957 Nov 26 05:22 PDGTABLE.MeV
-rw-r--r-- 1 atlas014 atlas 493 Nov 26 20:18 PoolFileCatalog.xml
-rw-r--r-- 1 atlas014 atlas 325 Nov 26 05:22 PoolFileCatalog.xml.BAK
-rw-r--r-- 1 atlas014 atlas 5552 Nov 26 05:21 RomeGeo2G4.py
-rw-r--r-- 1 atlas014 atlas 885 Nov 26 05:21 RomeSimulationConfig100.py
-rw-r--r-- 1 atlas014 atlas 45970611 Nov 26 20:18 vbfg4hits.pool.root
-rw-r--r-- 1 atlas014 atlas 1828194 Nov 26 05:22 vbf.pool.root
zeus69.cyf-kr.edu.pl
Using grid catalog type: edg
Source URL: file:///home/atlas014/globus-tmp.zeus69.26776.0/WMS_zeus69_027246_https_3a_2f_2fgdrb01.cern.ch_3a9000_2fEZaBp1DFYCzdZZn5jJ3VRQ/vbfg4hits.pool.root
File size: 45970611
VO name: atlas
Destination specified: se2-gla.scotgrid.ac.uk
Destination URL for copy: gsiftp://pool1-gla.scotgrid.ac.uk/pool1-gla:/gridstorage/e1/atlas/2005-11-26/file03ec9a13-6106-4eb5-af2b-ec3a929a3f4c.2163.0
# streams: 1
# set timeout to 0 seconds
Alias registered in Catalog: lfn:stdenis_vbfsim_vex06d_v3_003.pool.root
Transfer took 68210 ms
Destination URL registered in Catalog: srm://se2-gla.scotgrid.ac.uk/dpm/scotgrid.ac.uk/home/atlas/generated/2005-11-26/file03ec9a13-6106-4eb5-af2b-ec3a929a3f4c
guid:1c26342e-97f8-4295-8493-15a4884b4491
[lxplus]
Finally ok, results here: athena_sim_vex06d_v3_003.txt
Major updates:
-- RichardStDenis - 26 Nov 2005 %RESPONSIBLE%
%REVIEW%
Topic revision: r3 - 2005-11-26 - RichardStDenis
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